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SDC1 syndecan 1 [ Colius striatus (speckled mousebird) ]

Gene ID: 104560642, updated on 3-Aug-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
Locus tag
N325_12679
Gene type
protein coding
RefSeq status
MODEL
Organism
Colius striatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coliiformes; Coliidae; Colius
Also known as
Syndecan-1
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_12 current bColStr4.1.hap1 (GCF_028858725.1) 2 NC_084760.1 (37159400..37185238, complement)
100 previous assembly ASM69071v1 (GCF_000690715.1) Unplaced Scaffold NW_010704887.1 (19643..22944)

Chromosome 2 - NC_084760.1Genomic Context describing neighboring genes Neighboring gene matrilin 3 Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene pumilio RNA binding family member 2 Neighboring gene b(0,+)-type amino acid transporter 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858725.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColStr4.1.hap1 Primary Assembly

Genomic

  1. NC_084760.1 Reference bColStr4.1.hap1 Primary Assembly

    Range
    37159400..37185238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061989974.1 → XP_061845958.1  syndecan-1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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