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ASPH aspartate beta-hydroxylase [ Colius striatus (speckled mousebird) ]

Gene ID: 104557737, updated on 3-Aug-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Locus tag
N325_12008
Gene type
protein coding
RefSeq status
MODEL
Organism
Colius striatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coliiformes; Coliidae; Colius
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: 4
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_12 current bColStr4.1.hap1 (GCF_028858725.1) 4 NC_084762.1 (59430635..59549668, complement)
100 previous assembly ASM69071v1 (GCF_000690715.1) Unplaced Scaffold NW_010692454.1 (17199..49495)

Chromosome 4 - NC_084762.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene clavesin 1 Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene gamma-glutamyl hydrolase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
Aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858725.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColStr4.1.hap1 Primary Assembly

Genomic

  1. NC_084762.1 Reference bColStr4.1.hap1 Primary Assembly

    Range
    59430635..59549668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061994415.1 → XP_061850399.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

  2. XM_061994414.1 → XP_061850398.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

  3. XM_061994416.1 → XP_061850400.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

Nucleotide Protein
Heading Accession and Version

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