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ACAN aggrecan [ Colius striatus (speckled mousebird) ]

Gene ID: 104555769, updated on 3-Aug-2024

Summary

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Gene symbol
ACAN
Gene description
aggrecan
Gene type
protein coding
RefSeq status
MODEL
Organism
Colius striatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coliiformes; Coliidae; Colius
Orthologs
human mouse all
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Genomic context

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See ACAN in Genome Data Viewer
Location:
chromosome: 7
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_12 current bColStr4.1.hap1 (GCF_028858725.1) 7 NC_084765.1 (35934253..35962127)
100 previous assembly ASM69071v1 (GCF_000690715.1) Unplaced Scaffold NW_010683912.1 (14796..36671)

Chromosome 7 - NC_084765.1Genomic Context describing neighboring genes Neighboring gene DET1 partner of COP1 E3 ubiquitin ligase Neighboring gene apoptosis enhancing nuclease Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene milk fat globule EGF and factor V/VIII domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858725.1-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bColStr4.1.hap1 Primary Assembly

Genomic

  1. NC_084765.1 Reference bColStr4.1.hap1 Primary Assembly

    Range
    35934253..35962127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_061999857.1 → XP_061855841.1  aggrecan core protein isoform X1

  2. XM_061999858.1 → XP_061855842.1  aggrecan core protein isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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