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CSPG4 chondroitin sulfate proteoglycan 4 [ Mesitornis unicolor (brown roatelo) ]

Gene ID: 104548492, updated on 3-Aug-2024

Summary

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Gene symbol
CSPG4
Gene description
chondroitin sulfate proteoglycan 4
Locus tag
N332_07829
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesitornis unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Mesitornithiformes; Mesitornithidae; Mesitornis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See CSPG4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM69576v1 (GCF_000695765.1) Unplaced Scaffold NW_010156800.1 (8797..20552, complement)

NW_010156800.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010156800.1 Unplaced Scaffold Reference ASM69576v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesitornis unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69576v1

Genomic

  1. NW_010156800.1 Reference ASM69576v1

    Range
    8797..20552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010194522.1 → XP_010192824.1  LOW QUALITY PROTEIN: chondroitin sulfate proteoglycan 4

    Conserved Domains (3) summary
    cd00110
    Location:196 → 355
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam11914
    Location:2147 → 2218
    DUF3432; Domain of unknown function (DUF3432)
    pfam16184
    Location:491 → 644
    Cadherin_3; Cadherin-like
Nucleotide Protein
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