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OGDHL oxoglutarate dehydrogenase L [ Antrostomus carolinensis (chuck-will's-widow) ]

Gene ID: 104523568, updated on 3-Aug-2024

Summary

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Gene symbol
OGDHL
Gene description
oxoglutarate dehydrogenase L
Locus tag
N321_00529
Gene type
protein coding
RefSeq status
MODEL
Organism
Antrostomus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Caprimulgiformes; Caprimulgidae; Antrostomus
Orthologs
human mouse all
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Genomic context

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See OGDHL in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current ASM70074v1 (GCF_000700745.1) Unplaced Scaffold NW_010309842.1 (5020..54335, complement)

NW_010309842.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010309842 Unplaced Scaffold Reference ASM70074v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oxoglutarate dehydrogenase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
2-oxoglutarate dehydrogenase-like, mitochondrial
Names
oxoglutarate dehydrogenase like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Antrostomus carolinensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70074v1

Genomic

  1. NW_010309842.1 Reference ASM70074v1

    Range
    5020..54335 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029084544.1 → XP_028940377.1  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X3

    Conserved Domains (1) summary
    PRK09404
    Location:44 → 945
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  2. XM_010166192.1 → XP_010164494.1  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X2

    Conserved Domains (5) summary
    PRK09404
    Location:44 → 1004
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
    cd02016
    Location:255 → 518
    TPP_E1_OGDC_like; Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of ...
    pfam02779
    Location:642 → 853
    Transket_pyr; Transketolase, pyrimidine binding domain
    pfam16078
    Location:42 → 77
    2-oxogl_dehyd_N; 2-oxoglutarate dehydrogenase N-terminus
    pfam16870
    Location:860 → 1003
    OxoGdeHyase_C; 2-oxoglutarate dehydrogenase C-terminal

  3. XM_010166191.1 → XP_010164493.1  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1

    See identical proteins and their annotated locations for XP_010164493.1

    UniProtKB/TrEMBL
    A0A094KGD4
    Conserved Domains (5) summary
    PRK09404
    Location:44 → 1005
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed
    cd02016
    Location:255 → 518
    TPP_E1_OGDC_like; Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of ...
    pfam02779
    Location:642 → 854
    Transket_pyr; Transketolase, pyrimidine binding domain
    pfam16078
    Location:42 → 77
    2-oxogl_dehyd_N; 2-oxoglutarate dehydrogenase N-terminus
    pfam16870
    Location:861 → 1004
    OxoGdeHyase_C; 2-oxoglutarate dehydrogenase C-terminal

  4. XM_029084545.1 → XP_028940378.1  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X4

    Conserved Domains (1) summary
    PRK09404
    Location:1 → 963
    sucA; 2-oxoglutarate dehydrogenase E1 component; Reviewed

  5. XM_010166193.1 → XP_010164495.1  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X5

    Conserved Domains (4) summary
    COG0567
    Location:13 → 891
    SucA; 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
    cd02016
    Location:140 → 403
    TPP_E1_OGDC_like; Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of ...
    pfam02779
    Location:527 → 739
    Transket_pyr; Transketolase, pyrimidine binding domain
    pfam16870
    Location:746 → 889
    OxoGdeHyase_C; 2-oxoglutarate dehydrogenase C-terminal
Nucleotide Protein
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