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DAG1 dystroglycan 1 [ Antrostomus carolinensis (chuck-will's-widow) ]

Gene ID: 104517473, updated on 3-Aug-2024

Summary

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Gene symbol
DAG1
Gene description
dystroglycan 1
Locus tag
N321_06241
Gene type
protein coding
RefSeq status
MODEL
Organism
Antrostomus carolinensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Caprimulgiformes; Caprimulgidae; Antrostomus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See DAG1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM70074v1 (GCF_000700745.1) Unplaced Scaffold NW_010327025.1 (5..2484, complement)

NW_010327025.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010327025 Unplaced Scaffold Reference ASM70074v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in morphogenesis of an epithelium IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in muscle attachment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nerve development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of dystroglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of dystrophin-associated glycoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dystroglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Antrostomus carolinensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70074v1

Genomic

  1. NW_010327025.1 Reference ASM70074v1

    Range
    5..2484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010171789.2 → XP_010170091.2  dystroglycan

    Conserved Domains (4) summary
    cd11303
    Location:18 → 87
    Dystroglycan_repeat; Cadherin-like repeat domain of alpha dystroglycan
    cd11305
    Location:105 → 228
    alpha_DG_C; C-terminal domain of alpha dystroglycan
    PHA03247
    Location:230 → 423
    PHA03247; large tegument protein UL36; Provisional
    pfam05454
    Location:532 → 741
    DAG1; Dystroglycan (Dystrophin-associated glycoprotein 1)
Nucleotide Protein
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