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SYNJ1 synaptojanin 1 [ Chlamydotis macqueenii (Macqueen's bustard) ]

Gene ID: 104480796, updated on 3-Aug-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
Locus tag
N324_11767
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlamydotis macqueenii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Otidiformes; Otididae; Chlamydotis
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current ASM69519v1 (GCF_000695195.1) Unplaced Scaffold NW_010452714.1 (946..61313)

NW_010452714.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010452714.1 Unplaced Scaffold Reference ASM69519v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1
Names
Synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlamydotis macqueenii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69519v1

Genomic

  1. NW_010452714.1 Reference ASM69519v1

    Range
    946..61313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010121820.1 → XP_010120122.1  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A091KDM2
    Conserved Domains (3) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60 → 340
    Syja_N; SacI homology domain
    cl17169
    Location:867 → 1009
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_010121812.1 → XP_010120114.1  synaptojanin-1 isoform X1

    UniProtKB/TrEMBL
    A0A091KDM2
    Conserved Domains (3) summary
    cd09098
    Location:533 → 868
    INPP5c_Synj1; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 1
    pfam02383
    Location:60 → 340
    Syja_N; SacI homology domain
    cl17169
    Location:867 → 1009
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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