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SELP selectin P [ Pterocles gutturalis (yellow-throated sandgrouse) ]

Gene ID: 104471568, updated on 3-Aug-2024

Summary

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Gene symbol
SELP
Gene description
selectin P
Locus tag
N339_07250
Gene type
protein coding
RefSeq status
MODEL
Organism
Pterocles gutturalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Pterocliformes; Pteroclidae; Pterocles
Also known as
P-selectin
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SELP in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM69924v1 (GCF_000699245.1) Unplaced Scaffold NW_010104080.1 (241..5785, complement)

NW_010104080.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010104080.1 Unplaced Scaffold Reference ASM69924v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sialic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte tethering or rolling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: P-selectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pterocles gutturalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69924v1

Genomic

  1. NW_010104080.1 Reference ASM69924v1

    Range
    241..5785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010086948.1 → XP_010085250.1  LOW QUALITY PROTEIN: P-selectin

    Conserved Domains (3) summary
    cd00033
    Location:480 → 538
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd00054
    Location:125 → 153
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cl02432
    Location:8 → 117
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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