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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Pterocles gutturalis (yellow-throated sandgrouse) ]

Gene ID: 104464477, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Locus tag
N339_05864
Gene type
protein coding
RefSeq status
MODEL
Organism
Pterocles gutturalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Pterocliformes; Pteroclidae; Pterocles
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current ASM69924v1 (GCF_000699245.1) Unplaced Scaffold NW_010121271.1 (2218..21724)

NW_010121271.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010121271.1 Unplaced Scaffold Reference ASM69924v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
Transmembrane and TPR repeat-containing protein 4
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pterocles gutturalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69924v1

Genomic

  1. NW_010121271.1 Reference ASM69924v1

    Range
    2218..21724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010077195.1 → XP_010075497.1  transmembrane and TPR repeat-containing protein 4

    UniProtKB/TrEMBL
    A0A093CCS3
    Conserved Domains (6) summary
    sd00006
    Location:285 → 313
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:353 → 386
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:285 → 318
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:95 → 169
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:284 → 350
    TPR_11; TPR repeat
    pfam13431
    Location:307 → 340
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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