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FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Pterocles gutturalis (yellow-throated sandgrouse) ]

Gene ID: 104462004, updated on 18-Sep-2024

Summary

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Gene symbol
FDFT1
Gene description
farnesyl-diphosphate farnesyltransferase 1
Locus tag
N339_08249
Gene type
protein coding
RefSeq status
MODEL
Organism
Pterocles gutturalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Pterocliformes; Pteroclidae; Pterocles
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See FDFT1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current ASM69924v1 (GCF_000699245.1) Unplaced Scaffold NW_010111590.1 (14028..17905, complement)

NW_010111590.1Genomic Context describing neighboring genes Neighboring gene cathepsin B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010111590.1 Unplaced Scaffold Reference ASM69924v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables squalene synthase [NAD(P)H] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase
Names
Squalene synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pterocles gutturalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69924v1

Genomic

  1. NW_010111590.1 Reference ASM69924v1

    Range
    14028..17905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010073778.1 → XP_010072080.1  squalene synthase

    See identical proteins and their annotated locations for XP_010072080.1

    UniProtKB/TrEMBL
    A0A093DYD6
    Conserved Domains (1) summary
    cl00210
    Location:1 → 243
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
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