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LOC104454145 probable pectate lyase 5 [ Eucalyptus grandis ]

Gene ID: 104454145, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104454145
Gene description
probable pectate lyase 5
Locus tag
EUGRSUZ_G02748
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104454145 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 7 NC_052618.1 (52528684..52535456, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092444.1 (45529674..45536721, complement)

Chromosome 7 - NC_052618.1Genomic Context describing neighboring genes Neighboring gene pullulanase 1, chloroplastic Neighboring gene protein enabled homolog Neighboring gene protein NUCLEAR FUSION DEFECTIVE 4-like Neighboring gene protein SRC2 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 5
Names
probable pectate lyase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052618.1 Reference ASM1654582v1 Primary Assembly

    Range
    52528684..52535456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010068908.3 → XP_010067210.2  probable pectate lyase 5

    UniProtKB/TrEMBL
    A0A059BGQ2
    Conserved Domains (1) summary
    smart00656
    Location:140 → 334
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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