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LOC104453512 xyloglucan endotransglucosylase/hydrolase 1 [ Eucalyptus grandis ]

Gene ID: 104453512, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104453512
Gene description
xyloglucan endotransglucosylase/hydrolase 1
Locus tag
EUGRSUZ_G01909
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104453512 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 7 NC_052618.1 (40443000..40444706, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092444.1 (34937334..34939153, complement)

Chromosome 7 - NC_052618.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g26630, chloroplastic Neighboring gene ribonuclease 3-like protein 3 Neighboring gene uncharacterized LOC104453513 Neighboring gene uncharacterized LOC120296138

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 1
Names
probable xyloglucan endotransglucosylase/hydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052618.1 Reference ASM1654582v1 Primary Assembly

    Range
    40443000..40444706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010068086.3 → XP_010066388.1  xyloglucan endotransglucosylase/hydrolase 1

    See identical proteins and their annotated locations for XP_010066388.1

    UniProtKB/TrEMBL
    A0A059BDH8
    Conserved Domains (2) summary
    PLN03161
    Location:10 → 287
    PLN03161; Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
    cd02176
    Location:27 → 287
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version

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