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LOC104449209 probable beta-1,4-xylosyltransferase IRX9H [ Eucalyptus grandis ]

Gene ID: 104449209, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104449209
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
EUGRSUZ_F02177
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104449209 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 6 NC_052617.1 (34088166..34092235)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092443.1 (29566221..29570296, complement)

Chromosome 6 - NC_052617.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104449211 Neighboring gene protein DETOXIFICATION 48 Neighboring gene uncharacterized LOC120294917 Neighboring gene uncharacterized LOC104449207

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052617.1 Reference ASM1654582v1 Primary Assembly

    Range
    34088166..34092235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039315926.1 → XP_039171860.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A059BRJ2
    Conserved Domains (1) summary
    cd00218
    Location:161 → 386
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_010063279.3 → XP_010061581.1  probable beta-1,4-xylosyltransferase IRX9H

    See identical proteins and their annotated locations for XP_010061581.1

    UniProtKB/TrEMBL
    A0A059BRJ2
    Conserved Domains (1) summary
    cd00218
    Location:161 → 386
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_018876713.2 → XP_018732258.1  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A059BRJ2
    Conserved Domains (1) summary
    cd00218
    Location:161 → 386
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

RNA

  1. XR_726511.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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