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LOC104444119 granule-bound starch synthase 1, chloroplastic/amyloplastic [ Eucalyptus grandis ]

Gene ID: 104444119, updated on 18-Sep-2024

Summary

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Gene symbol
LOC104444119
Gene description
granule-bound starch synthase 1, chloroplastic/amyloplastic
Locus tag
EUGRSUZ_E01068
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104444119 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 5 NC_052616.1 (10404741..10409875, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092442.1 (11427217..11432337, complement)

Chromosome 5 - NC_052616.1Genomic Context describing neighboring genes Neighboring gene granule-bound starch synthase 1, chloroplastic/amyloplastic-like Neighboring gene glucan endo-1,3-beta-glucosidase 11 Neighboring gene uncharacterized LOC108960164 Neighboring gene pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
granule-bound starch synthase 1, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052616.1 Reference ASM1654582v1 Primary Assembly

    Range
    10404741..10409875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010057727.3 → XP_010056029.2  granule-bound starch synthase 1, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A059C344
    Conserved Domains (1) summary
    cd03791
    Location:88 → 584
    GT5_Glycogen_synthase_DULL1-like; Glycogen synthase GlgA and similar proteins
Nucleotide Protein
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