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LOC104441656 endoglucanase 6 [ Eucalyptus grandis ]

Gene ID: 104441656, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104441656
Gene description
endoglucanase 6
Locus tag
EUGRSUZ_D01733
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104441656 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 4 NC_052615.1 (28538801..28544944)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092441.1 (31359104..31365051)

Chromosome 4 - NC_052615.1Genomic Context describing neighboring genes Neighboring gene probable polygalacturonase Neighboring gene ethylene-responsive transcription factor ERF061 Neighboring gene long chain acyl-CoA synthetase 4 Neighboring gene small nucleolar RNA snoR64a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: endoglucanase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052615.1 Reference ASM1654582v1 Primary Assembly

    Range
    28538801..28544944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010054826.3 → XP_010053128.2  LOW QUALITY PROTEIN: endoglucanase 6

    UniProtKB/TrEMBL
    A0A059CFZ9
    Conserved Domains (1) summary
    PLN02171
    Location:8 → 621
    PLN02171; endoglucanase
Nucleotide Protein
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