U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC104440881 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [ Eucalyptus grandis ]

Gene ID: 104440881, updated on 7-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC104440881
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7
Locus tag
EUGRSUZ_D00465
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC104440881 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 4 NC_052615.1 (9091967..9097493, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092441.1 (8434493..8440032, complement)

Chromosome 4 - NC_052615.1Genomic Context describing neighboring genes Neighboring gene L-type lectin-domain containing receptor kinase IX.1-like Neighboring gene mannose/glucose-specific lectin-like Neighboring gene probable cinnamyl alcohol dehydrogenase 1 Neighboring gene uncharacterized LOC120292711

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052615.1 Reference ASM1654582v1 Primary Assembly

    Range
    9091967..9097493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010053869.3 → XP_010052171.2  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7

    UniProtKB/TrEMBL
    A0A059CCJ0
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 841
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases