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LOC104438425 nod factor hydrolase protein 1 [ Eucalyptus grandis ]

Gene ID: 104438425, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104438425
Gene description
nod factor hydrolase protein 1
Locus tag
EUGRSUZ_C04060
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104438425 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 3 NC_052614.1 (70877551..70879184, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092440.1 (75254601..75256237)

Chromosome 3 - NC_052614.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120292107 Neighboring gene receptor-like protein EIX2 Neighboring gene receptor-like protein EIX1 Neighboring gene two-component response regulator ARR12 Neighboring gene calmodulin-binding protein 60 E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nod factor hydrolase protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052614.1 Reference ASM1654582v1 Primary Assembly

    Range
    70877551..70879184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010051570.3 → XP_010049872.2  nod factor hydrolase protein 1

    UniProtKB/TrEMBL
    A0A058ZX51
    Conserved Domains (1) summary
    cd02879
    Location:33 → 369
    GH18_plant_chitinase_class_V; The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic ...
Nucleotide Protein
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