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LOC104437646 heparanase-like protein 3 [ Eucalyptus grandis ]

Gene ID: 104437646, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104437646
Gene description
heparanase-like protein 3
Locus tag
EUGRSUZ_C02742
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104437646 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 3 NC_052614.1 (51375610..51378988)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092440.1 (52485683..52489019)

Chromosome 3 - NC_052614.1Genomic Context describing neighboring genes Neighboring gene heparanase-like protein 3 Neighboring gene heparanase-like protein 3 Neighboring gene ER membrane protein complex subunit 7 homolog Neighboring gene peroxidase 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucuronidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparanase-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052614.1 Reference ASM1654582v1 Primary Assembly

    Range
    51375610..51378988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039309059.1 → XP_039164993.1  heparanase-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A059CTV0
    Conserved Domains (1) summary
    pfam03662
    Location:33 → 354
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain

  2. XM_010050635.3 → XP_010048937.2  heparanase-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A059CTV0
    Conserved Domains (1) summary
    pfam03662
    Location:33 → 349
    Glyco_hydro_79n; Glycosyl hydrolase family 79, N-terminal domain
Nucleotide Protein
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