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LOC104436241 probable pectate lyase 4 [ Eucalyptus grandis ]

Gene ID: 104436241, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104436241
Gene description
probable pectate lyase 4
Locus tag
EUGRSUZ_A01218
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104436241 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 1 NC_052612.1 (25260145..25264624, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092438.1 (19018504..19023098)

Chromosome 1 - NC_052612.1Genomic Context describing neighboring genes Neighboring gene UDP-glucuronic acid decarboxylase 1 Neighboring gene exocyst complex component EXO70H1-like Neighboring gene ankyrin repeat-containing protein ITN1 Neighboring gene probable membrane-associated kinase regulator 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052612.1 Reference ASM1654582v1 Primary Assembly

    Range
    25260145..25264624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010048966.3 → XP_010047268.2  probable pectate lyase 4

    UniProtKB/TrEMBL
    A0A059DF85
    Conserved Domains (1) summary
    smart00656
    Location:128 → 294
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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