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LOC104428369 laccase-17 [ Eucalyptus grandis ]

Gene ID: 104428369, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104428369
Gene description
laccase-17
Locus tag
EUGRSUZ_L00355
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104428369 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 2 NC_052613.1 (40094098..40096293, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092458.1 (115690..117944)

Chromosome 2 - NC_052613.1Genomic Context describing neighboring genes Neighboring gene receptor-like protein kinase HERK 1 Neighboring gene uncharacterized LOC120290954 Neighboring gene uncharacterized LOC108956528 Neighboring gene uncharacterized LOC108956527

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052613.1 Reference ASM1654582v1 Primary Assembly

    Range
    40094098..40096293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010041366.3 → XP_010039668.1  laccase-17

    See identical proteins and their annotated locations for XP_010039668.1

    UniProtKB/TrEMBL
    A0A058ZVJ2, A0A059D4G0
    Conserved Domains (4) summary
    cd13849
    Location:8 → 116
    CuRO_1_LCC_plant; The first cupredoxin domain of plant laccases
    cd13875
    Location:131 → 279
    CuRO_2_LCC_plant; The second cupredoxin domain of the plant laccases
    cd13897
    Location:391 → 528
    CuRO_3_LCC_plant; The third cupredoxin domain of the plant laccases
    TIGR03389
    Location:6 → 545
    laccase; laccase, plant
Nucleotide Protein
Heading Accession and Version

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