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LOC104422020 alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic [ Eucalyptus grandis ]

Gene ID: 104422020, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104422020
Gene description
alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic
Locus tag
EUGRSUZ_J01374
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104422020 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 10 NC_052621.1 (16212676..16225017, complement)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092447.1 (16934568..16969326, complement)

Chromosome 10 - NC_052621.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104423639 Neighboring gene uncharacterized LOC120288931 Neighboring gene probable galacturonosyltransferase 14 Neighboring gene F-box protein At5g39250

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycogen phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052621.1 Reference ASM1654582v1 Primary Assembly

    Range
    16212676..16225017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039303344.1 → XP_039159278.1  alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic isoform X1

    UniProtKB/TrEMBL
    A0A059AEY0
    Conserved Domains (1) summary
    cd04300
    Location:95 → 956
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins

  2. XM_039303345.1 → XP_039159279.1  alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic isoform X2

    Conserved Domains (1) summary
    cd04300
    Location:1 → 805
    GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
Nucleotide Protein
Heading Accession and Version

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