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LOC104419100 probable alpha-mannosidase At5g13980 [ Eucalyptus grandis ]

Gene ID: 104419100, updated on 7-Dec-2023

Summary

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Gene symbol
LOC104419100
Gene description
probable alpha-mannosidase At5g13980
Gene type
protein coding
RefSeq status
MODEL
Organism
Eucalyptus grandis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Genomic context

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See LOC104419100 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
29
Annotation release Status Assembly Chr Location
102 current ASM1654582v1 (GCF_016545825.1) 9 NC_052620.1 (28292768..28302978)
101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092446.1 (25952047..25962252)

Chromosome 9 - NC_052620.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene cytochrome b-c1 complex subunit Rieske-4, mitochondrial Neighboring gene RING finger protein 10 Neighboring gene putative pentatricopeptide repeat-containing protein At2g01510

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha-mannosidase At5g13980
Names
lysosomal alpha-mannosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1654582v1 Primary Assembly

Genomic

  1. NC_052620.1 Reference ASM1654582v1 Primary Assembly

    Range
    28292768..28302978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010030634.3 → XP_010028936.2  probable alpha-mannosidase At5g13980

    UniProtKB/TrEMBL
    A0A059AP45
    Conserved Domains (2) summary
    PLN02701
    Location:32 → 1009
    PLN02701; alpha-mannosidase
    cd10810
    Location:36 → 312
    GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
Nucleotide Protein
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