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DERA deoxyribose-phosphate aldolase [ Nestor notabilis (Kea) ]

Gene ID: 104403703, updated on 3-Aug-2024

Summary

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Gene symbol
DERA
Gene description
deoxyribose-phosphate aldolase
Locus tag
N333_05285
Gene type
protein coding
RefSeq status
MODEL
Organism
Nestor notabilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Nestor
Orthologs
human mouse all
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Genomic context

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See DERA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM69687v1 (GCF_000696875.1) Unplaced Scaffold NW_009923086.1 (107179..150913, complement)

NW_009923086.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 15 member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009923086.1 Unplaced Scaffold Reference ASM69687v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyribose-phosphate aldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deoxyribonucleotide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: putative deoxyribose-phosphate aldolase
Names
Putative deoxyribose-phosphate aldolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nestor notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69687v1

Genomic

  1. NW_009923086.1 Reference ASM69687v1

    Range
    107179..150913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010011939.1 → XP_010010241.1  LOW QUALITY PROTEIN: putative deoxyribose-phosphate aldolase

    UniProtKB/TrEMBL
    A0A091RXG5
    Conserved Domains (1) summary
    cd00959
    Location:81 → 308
    DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family
Nucleotide Protein
Heading Accession and Version

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