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TMTC4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Nestor notabilis (Kea) ]

Gene ID: 104399067, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Locus tag
N333_01079
Gene type
protein coding
RefSeq status
MODEL
Organism
Nestor notabilis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Psittaciformes; Psittacidae; Nestor
Orthologs
human mouse all
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Genomic context

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See TMTC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current ASM69687v1 (GCF_000696875.1) Unplaced Scaffold NW_009911588.1 (1792..48676)

NW_009911588.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009911588.1 Unplaced Scaffold Reference ASM69687v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
Transmembrane and TPR repeat-containing protein 4
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nestor notabilis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69687v1

Genomic

  1. NW_009911588.1 Reference ASM69687v1

    Range
    1792..48676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010015550.1 → XP_010013852.1  transmembrane and TPR repeat-containing protein 4

    Conserved Domains (6) summary
    sd00006
    Location:480 → 508
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:548 → 581
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:480 → 513
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:290 → 364
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:479 → 545
    TPR_11; TPR repeat
    pfam13431
    Location:502 → 535
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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