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RAF1 Raf-1 proto-oncogene, serine/threonine kinase [ Chaetura pelagica (chimney swift) ]

Gene ID: 104398706, updated on 3-Aug-2024

Summary

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Gene symbol
RAF1
Gene description
Raf-1 proto-oncogene, serine/threonine kinase
Locus tag
M959_11320
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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See RAF1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009952486.1 (1056978..1089701, complement)

NW_009952486.1Genomic Context describing neighboring genes Neighboring gene tRNA splicing endonuclease subunit 2 Neighboring gene MKRN2 opposite strand Neighboring gene makorin ring finger protein 2 Neighboring gene CCHC-type zinc finger nucleic acid binding protein Neighboring gene ISY1 splicing factor homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009952486.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RAF proto-oncogene serine/threonine-protein kinase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009952486.1 Reference ChaPel_1.0

    Range
    1056978..1089701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010008846.1 → XP_010007148.1  RAF proto-oncogene serine/threonine-protein kinase isoform X2

    See identical proteins and their annotated locations for XP_010007148.1

    Conserved Domains (4) summary
    cd01816
    Location:57 → 131
    Raf_RBD; Ubiquitin domain of Raf serine/threonine kinases
    cd14149
    Location:336 → 618
    STKc_C-Raf; Catalytic domain of the Serine/Threonine Kinase, C-Raf (Rapidly Accelerated Fibrosarcoma) kinase
    pfam00069
    Location:350 → 605
    Pkinase; Protein kinase domain
    pfam00130
    Location:139 → 187
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)

  2. XM_010008845.1 → XP_010007147.1  RAF proto-oncogene serine/threonine-protein kinase isoform X1

    Conserved Domains (4) summary
    cd01816
    Location:57 → 131
    Raf_RBD; Ubiquitin domain of Raf serine/threonine kinases
    cd14149
    Location:356 → 638
    STKc_C-Raf; Catalytic domain of the Serine/Threonine Kinase, C-Raf (Rapidly Accelerated Fibrosarcoma) kinase
    pfam00069
    Location:370 → 625
    Pkinase; Protein kinase domain
    pfam00130
    Location:139 → 187
    C1_1; Phorbol esters/diacylglycerol binding domain (C1 domain)
Nucleotide Protein
Heading Accession and Version

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