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CLEC16A C-type lectin domain containing 16A [ Chaetura pelagica (chimney swift) ]

Gene ID: 104393765, updated on 3-Aug-2024

Summary

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Gene symbol
CLEC16A
Gene description
C-type lectin domain containing 16A
Locus tag
M959_02442
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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See CLEC16A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009954215.1 (405596..456709)

NW_009954215.1Genomic Context describing neighboring genes Neighboring gene class II major histocompatibility complex transactivator Neighboring gene Dexi homolog Neighboring gene suppressor of cytokine signaling 1 Neighboring gene lipopolysaccharide induced TNF factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009954215.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLEC16A
Names
C-type lectin domain family 16 member A
Protein CLEC16A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009954215.1 Reference ChaPel_1.0

    Range
    405596..456709
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010003285.1 → XP_010001587.1  protein CLEC16A

    Conserved Domains (1) summary
    pfam09758
    Location:23 → 170
    FPL; uncharacterized conserved protein
Nucleotide Protein
Heading Accession and Version

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