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TYRP1 tyrosinase related protein 1 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104392513, updated on 3-Aug-2024

Summary

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Gene symbol
TYRP1
Gene description
tyrosinase related protein 1
Locus tag
M959_08108
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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See TYRP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009953962.1 (692316..703231)

NW_009953962.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104392523 Neighboring gene RNA-directed DNA polymerase from mobile element jockey-like Neighboring gene leucine rich adaptor protein 1 like Neighboring gene multiple PDZ domain crumbs cell polarity complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009953962.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in melanocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in melanosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in melanosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5,6-dihydroxyindole-2-carboxylic acid oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009953962.1 Reference ChaPel_1.0

    Range
    692316..703231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010001918.1 → XP_010000220.1  5,6-dihydroxyindole-2-carboxylic acid oxidase

    Conserved Domains (1) summary
    pfam00264
    Location:182 → 415
    Tyrosinase; Common central domain of tyrosinase
Nucleotide Protein
Heading Accession and Version

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