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VANGL1 VANGL planar cell polarity protein 1 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104389257, updated on 3-Aug-2024

Summary

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Gene symbol
VANGL1
Gene description
VANGL planar cell polarity protein 1
Locus tag
M959_12439
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
Orthologs
human mouse all
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Genomic context

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See VANGL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009953386.1 (629205..661350, complement)

NW_009953386.1Genomic Context describing neighboring genes Neighboring gene calsequestrin 2 Neighboring gene eukaryotic initiation factor 4A-III-like Neighboring gene chromodomain helicase DNA binding protein 1 like Neighboring gene fatty acid amide hydrolase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009953386.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vang-like protein 1
Names
Vang-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009953386.1 Reference ChaPel_1.0

    Range
    629205..661350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009998218.1 → XP_009996520.1  vang-like protein 1

    Conserved Domains (2) summary
    pfam06638
    Location:29 → 524
    Strabismus; Strabismus protein
    pfam08648
    Location:13 → 103
    DUF1777; Protein of unknown function (DUF1777)
Nucleotide Protein
Heading Accession and Version

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