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LOC104387195 toll-like receptor 2 type-2 [ Chaetura pelagica (chimney swift) ]

Gene ID: 104387195, updated on 3-Aug-2024

Summary

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Gene symbol
LOC104387195
Gene description
toll-like receptor 2 type-2
Locus tag
M959_02799
Gene type
protein coding
RefSeq status
MODEL
Organism
Chaetura pelagica
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Apodidae; Apodinae; Chaetura
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Genomic context

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See LOC104387195 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ChaPel_1.0 (GCF_000747805.1) Unplaced Scaffold NW_009952973.1 (2476887..2479238)

NW_009952973.1Genomic Context describing neighboring genes Neighboring gene transmembrane 131 like Neighboring gene toll-like receptor 2 type-1 Neighboring gene secreted frizzled related protein 2 Neighboring gene dachsous cadherin-related 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009952973.1 Unplaced Scaffold Reference ChaPel_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacyl lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
toll-like receptor 2 type-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chaetura pelagica Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChaPel_1.0

Genomic

  1. NW_009952973.1 Reference ChaPel_1.0

    Range
    2476887..2479238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009995901.1 → XP_009994203.1  toll-like receptor 2 type-2

    Conserved Domains (6) summary
    smart00255
    Location:639 → 783
    TIR; Toll - interleukin 1 - resistance
    COG4886
    Location:79 → 291
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:257 → 511
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:361 → 387
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:58 → 114
    LRR_8; Leucine rich repeat
    cl15307
    Location:532 → 585
    TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain
Nucleotide Protein
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