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SYNJ2 synaptojanin 2 [ Tauraco erythrolophus (red-crested turaco) ]

Gene ID: 104380352, updated on 3-Aug-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
Locus tag
N340_13759
Gene type
protein coding
RefSeq status
MODEL
Organism
Tauraco erythrolophus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Musophagiformes; Musophagidae; Tauraco
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM70936v1 (GCF_000709365.1) Unplaced Scaffold NW_010071024.1 (29887..71288, complement)

NW_010071024.1Genomic Context describing neighboring genes Neighboring gene serine active site containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010071024.1 Unplaced Scaffold Reference ASM70936v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: synaptojanin-2
Names
Synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tauraco erythrolophus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70936v1

Genomic

  1. NW_010071024.1 Reference ASM70936v1

    Range
    29887..71288 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009987815.1 → XP_009986117.1  LOW QUALITY PROTEIN: synaptojanin-2

    UniProtKB/TrEMBL
    A0A093D1L3
    Conserved Domains (3) summary
    cd09099
    Location:243 → 578
    INPP5c_Synj2; Catalytic inositol polyphosphate 5-phosphatase (INPP5c) domain of synaptojanin 2
    pfam02383
    Location:4 → 55
    Syja_N; SacI homology domain
    cl17169
    Location:577 → 722
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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