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SDC2 syndecan 2 [ Tyto alba (common barn owl) ]

Gene ID: 104367731, updated on 3-Aug-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
Locus tag
N341_09839
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Also known as
Syndecan-2
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881330.1 (25104973..25166195, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009976093.1 (9732..66507, complement)

NW_024881330.1Genomic Context describing neighboring genes Neighboring gene metadherin Neighboring gene carboxypeptidase Q Neighboring gene phosphatidylserine synthase 1 Neighboring gene mitochondrial transcription termination factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881330.1 Reference T.alba_DEE_v4.0

    Range
    25104973..25166195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042785911.1 → XP_042641845.1  syndecan-2

    UniProtKB/TrEMBL
    A0A093ERZ1
    Conserved Domains (2) summary
    smart00294
    Location:169 → 185
    4.1m; putative band 4.1 homologues' binding motif
    NF000535
    Location:18 → 138
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
Nucleotide Protein
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