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SGCG sarcoglycan gamma [ Tyto alba (common barn owl) ]

Gene ID: 104364994, updated on 3-Aug-2024

Summary

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Gene symbol
SGCG
Gene description
sarcoglycan gamma
Locus tag
N341_10554
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See SGCG in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881282.1 (20676540..20821683)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010014355.1 (39551..112870, complement)

NW_024881282.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122153473 Neighboring gene uncharacterized LOC122153474 Neighboring gene fibroblast growth factor 9 Neighboring gene sacsin molecular chaperone Neighboring gene TNF receptor superfamily member 19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan
Names
Gamma-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881282.1 Reference T.alba_DEE_v4.0

    Range
    20676540..20821683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042791922.1 → XP_042647856.1  gamma-sarcoglycan isoform X2

  2. XM_042791921.1 → XP_042647855.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A093HRW0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_042791917.1 → XP_042647851.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A093HRW0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_042791918.1 → XP_042647852.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A093HRW0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_042791919.1 → XP_042647853.1  gamma-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A093HRW0
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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