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ASPH aspartate beta-hydroxylase [ Tyto alba (common barn owl) ]

Gene ID: 104363350, updated on 3-Aug-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Locus tag
N341_11343
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
34
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881330.1 (39668236..39785729)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010007948.1 (2314..53062)

NW_024881330.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene gamma-glutamyl hydrolase Neighboring gene uncharacterized LOC116962056 Neighboring gene clavesin 1 Neighboring gene uncharacterized LOC122152667 Neighboring gene chromodomain helicase DNA binding protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
Aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881330.1 Reference T.alba_DEE_v4.0

    Range
    39668236..39785729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042786241.1 → XP_042642175.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    Conserved Domains (1) summary
    pfam05279
    Location:29 → 110
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  2. XM_042786236.1 → XP_042642170.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    Conserved Domains (5) summary
    TIGR02521
    Location:437 → 595
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:345 → 458
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:29 → 277
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:461 → 485
    TPR; TPR repeat [structural motif]
    cl40423
    Location:588 → 748
    cupin_RmlC-like; RmlC-like cupin superfamily

  3. XM_042786232.1 → XP_042642166.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (5) summary
    TIGR02521
    Location:461 → 619
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:369 → 482
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:29 → 302
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:485 → 509
    TPR; TPR repeat [structural motif]
    cl40423
    Location:612 → 772
    cupin_RmlC-like; RmlC-like cupin superfamily

  4. XM_042786233.1 → XP_042642167.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (5) summary
    TIGR02521
    Location:462 → 620
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:370 → 483
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:29 → 302
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:486 → 510
    TPR; TPR repeat [structural motif]
    cl40423
    Location:613 → 739
    cupin_RmlC-like; RmlC-like cupin superfamily

  5. XM_042786231.1 → XP_042642165.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (5) summary
    TIGR02521
    Location:462 → 620
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:370 → 483
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:29 → 302
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:486 → 510
    TPR; TPR repeat [structural motif]
    cl40423
    Location:613 → 773
    cupin_RmlC-like; RmlC-like cupin superfamily

  6. XM_042786234.1 → XP_042642168.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (5) summary
    TIGR02521
    Location:447 → 605
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:355 → 468
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:29 → 287
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:471 → 495
    TPR; TPR repeat [structural motif]
    cl40423
    Location:598 → 758
    cupin_RmlC-like; RmlC-like cupin superfamily

  7. XM_042786238.1 → XP_042642172.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    Conserved Domains (4) summary
    TIGR02521
    Location:462 → 561
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:370 → 483
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:29 → 302
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:486 → 510
    TPR; TPR repeat [structural motif]

  8. XM_042786237.1 → XP_042642171.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    Conserved Domains (4) summary
    TIGR02521
    Location:462 → 561
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    TIGR02795
    Location:370 → 483
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:29 → 302
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:486 → 510
    TPR; TPR repeat [structural motif]

  9. XM_042786240.1 → XP_042642174.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

    Conserved Domains (1) summary
    pfam05279
    Location:29 → 302
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  10. XM_042786239.1 → XP_042642173.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    Conserved Domains (1) summary
    pfam05279
    Location:29 → 302
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  11. XM_032994871.2 → XP_032850762.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (4) summary
    pfam05279
    Location:14 → 287
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:371 → 564
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    sd00006
    Location:471 → 495
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:604 → 758
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  12. XM_032994874.2 → XP_032850765.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    Conserved Domains (4) summary
    pfam05279
    Location:14 → 272
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG4783
    Location:356 → 549
    YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
    sd00006
    Location:456 → 480
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:589 → 743
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
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