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VCAM1 vascular cell adhesion molecule 1 [ Tyto alba (common barn owl) ]

Gene ID: 104362392, updated on 3-Aug-2024

Summary

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Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
Locus tag
N341_08038
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881272.1 (14406998..14418582)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_010004405.1 (31287..38406, complement)

NW_024881272.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 14A Neighboring gene G protein-coupled receptor 88 Neighboring gene RNA 3'-terminal phosphate cyclase Neighboring gene dihydrolipoamide branched chain transacylase E2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1
Names
Vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881272.1 Reference T.alba_DEE_v4.0

    Range
    14406998..14418582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033000371.2 → XP_032856262.1  vascular cell adhesion protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A093FGX8
    Conserved Domains (5) summary
    smart00408
    Location:212 → 269
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:474 → 550
    IG; Immunoglobulin
    smart00410
    Location:297 → 372
    IG_like; Immunoglobulin like
    cd00096
    Location:8 → 12
    Ig; Ig strand A' [structural motif]
    cl11960
    Location:1 → 88
    Ig; Immunoglobulin domain

  2. XM_033000370.2 → XP_032856261.2  vascular cell adhesion protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A093FGX8
    Conserved Domains (4) summary
    smart00408
    Location:234 → 291
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:406 → 483
    IG; Immunoglobulin
    smart00410
    Location:319 → 394
    IG_like; Immunoglobulin like
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]

  3. XM_033000372.2 → XP_032856263.2  vascular cell adhesion protein 1 isoform X3

    Conserved Domains (4) summary
    smart00408
    Location:234 → 291
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:406 → 483
    IG; Immunoglobulin
    smart00410
    Location:31 → 93
    IG_like; Immunoglobulin like
    cd00096
    Location:238 → 242
    Ig; Ig strand B [structural motif]
Nucleotide Protein
Heading Accession and Version

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