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FREM1 FRAS1 related extracellular matrix 1 [ Tyto alba (common barn owl) ]

Gene ID: 104359208, updated on 3-Aug-2024

Summary

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Gene symbol
FREM1
Gene description
FRAS1 related extracellular matrix 1
Locus tag
N341_08104
Gene type
protein coding
RefSeq status
MODEL
Organism
Tyto alba
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Strigiformes; Tytonidae; Tyto
Orthologs
human mouse all
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Genomic context

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See FREM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
102 current T.alba_DEE_v4.0 (GCF_018691265.1) Unplaced Scaffold NW_024881318.1 (38448157..38523124, complement)
100 previous assembly ASM68720v1 (GCF_000687205.1) Unplaced Scaffold NW_009992176.1 (1260..42028)

NW_024881318.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 21 Neighboring gene cerberus 1, DAN family BMP antagonist Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene small nuclear RNA activating complex polypeptide 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
FRAS1-related extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tyto alba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T.alba_DEE_v4.0

Genomic

  1. NW_024881318.1 Reference T.alba_DEE_v4.0

    Range
    38448157..38523124 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033004219.1 → XP_032860110.1  FRAS1-related extracellular matrix protein 1 isoform X2

    Conserved Domains (3) summary
    smart00034
    Location:2064 → 2186
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:1495 → 1603
    Cadherin_3; Cadherin-like
    cl02522
    Location:1747 → 1835
    Calx-beta; Calx-beta domain

  2. XM_033004217.1 → XP_032860108.1  FRAS1-related extracellular matrix protein 1 isoform X1

    Conserved Domains (3) summary
    smart00034
    Location:2066 → 2188
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:1497 → 1605
    Cadherin_3; Cadherin-like
    cl02522
    Location:1749 → 1837
    Calx-beta; Calx-beta domain

  3. XM_033004218.1 → XP_032860109.1  FRAS1-related extracellular matrix protein 1 isoform X1

    Conserved Domains (3) summary
    smart00034
    Location:2066 → 2188
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    pfam16184
    Location:1497 → 1605
    Cadherin_3; Cadherin-like
    cl02522
    Location:1749 → 1837
    Calx-beta; Calx-beta domain

  4. XM_033004220.1 → XP_032860111.1  FRAS1-related extracellular matrix protein 1 isoform X3

    Conserved Domains (1) summary
    pfam16184
    Location:401 → 507
    Cadherin_3; Cadherin-like
Nucleotide Protein
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