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LINC01256 long intergenic non-protein coding RNA 1256 [ Homo sapiens (human) ]

Gene ID: 104355285, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01256provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1256provided by HGNC
Primary source
HGNC:HGNC:49895
See related
Ensembl:ENSG00000251398 AllianceGenome:HGNC:49895
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TCONS_l2_00021715
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01256 in Genome Data Viewer
Location:
4q28.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (132591089..132678503)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (135914802..136002189)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (133512244..133599658)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377428 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:133042782-133042957 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:133045368-133046113 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:133046114-133046858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:133090465-133090966 Neighboring gene elongation factor for RNA polymerase II 2 pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:133416211-133416731 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:133416732-133417251 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:133440023-133441222 Neighboring gene alanyl-tRNA synthetase 1 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:133579472-133579972 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:133730595-133731094 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:133865245-133865746 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:133865747-133866246 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:133879807-133880307 Neighboring gene uncharacterized LOC124900861 Neighboring gene uncharacterized LOC124900862

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126401.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098858, BX088800
    Related
    ENST00000513270.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    132591089..132678503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    135914802..136002189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases