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LHX5-AS1 LHX5 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 104355219, updated on 10-Oct-2023

Summary

Official Symbol
LHX5-AS1provided by HGNC
Official Full Name
LHX5 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:49570
See related
AllianceGenome:HGNC:49570
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
locus4010; locus 4010
Expression
Low expression observed in reference dataset See more
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Genomic context

See LHX5-AS1 in Genome Data Viewer
Location:
12q24.13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (113472003..113480481)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (113448010..113456488)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (113909808..113918286)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene serine dehydratase like Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:113905667-113906660 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:113908758-113909558 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:113916060-113917027 Neighboring gene LIM homeobox 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:113938319-113938819 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:114025396-114026173 Neighboring gene MPRA-validated peak1973 silencer Neighboring gene uncharacterized LOC105369990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:114079299-114079817 Neighboring gene uncharacterized LOC105369991

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126425.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DB553737

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    113472003..113480481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    113448010..113456488
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)