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OGT O-linked N-acetylglucosamine (GlcNAc) transferase [ Leptosomus discolor (cuckoo roller) ]

Gene ID: 104340375, updated on 3-Aug-2024

Summary

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Gene symbol
OGT
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase
Locus tag
N330_01053
Gene type
protein coding
RefSeq status
MODEL
Organism
Leptosomus discolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Coraciiformes; Leptosomidae; Leptosomus
Orthologs
human mouse all
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Genomic context

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See OGT in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM69178v1 (GCF_000691785.1) Unplaced Scaffold NW_009880711.1 (3443..31436)

NW_009880711.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009880711.1 Unplaced Scaffold Reference ASM69178v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Leptosomus discolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69178v1

Genomic

  1. NW_009880711.1 Reference ASM69178v1

    Range
    3443..31436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009958122.1 → XP_009956424.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

    Conserved Domains (7) summary
    cd05804
    Location:103 → 263
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    COG0457
    Location:187 → 444
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:310 → 338
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:72 → 105
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:72 → 137
    TPR_11; TPR repeat
    pfam13424
    Location:136 → 206
    TPR_12; Tetratricopeptide repeat
    pfam13844
    Location:539 → 1006
    Glyco_transf_41; Glycosyl transferase family 41
Nucleotide Protein
Heading Accession and Version

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