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NCAM1 neural cell adhesion molecule 1 [ Opisthocomus hoazin ]

Gene ID: 104338601, updated on 3-Aug-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
Locus tag
N306_01936
Gene type
protein coding
RefSeq status
MODEL
Organism
Opisthocomus hoazin
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Opisthocomiformes; Opisthocomidae; Opisthocomus
Orthologs
human mouse all
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Genomic context

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See NCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009900058.1 (504705..649995)

NW_009900058.1Genomic Context describing neighboring genes Neighboring gene beta-carotene oxygenase 2 Neighboring gene 6-pyruvoyltetrahydropterin synthase Neighboring gene tetratricopeptide repeat domain 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009900058.1 Unplaced Scaffold Reference ASM69207v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69207v1

Genomic

  1. NW_009900058.1 Reference ASM69207v1

    Range
    504705..649995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009944654.1 → XP_009942956.1  neural cell adhesion molecule 1

    UniProtKB/TrEMBL
    A0A091VIE9
    Conserved Domains (8) summary
    cd05730
    Location:217 → 313
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:26 → 121
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:312 → 408
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:424 → 492
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:228 → 310
    IG_like; Immunoglobulin like
    cd00063
    Location:504 → 601
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:27 → 120
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:608 → 690
    fn3; Fibronectin type III domain
Nucleotide Protein
Heading Accession and Version

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