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TGDS TDP-glucose 4,6-dehydratase [ Opisthocomus hoazin ]

Gene ID: 104336519, updated on 3-Aug-2024

Summary

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Gene symbol
TGDS
Gene description
TDP-glucose 4,6-dehydratase
Locus tag
N306_13795
Gene type
protein coding
RefSeq status
MODEL
Organism
Opisthocomus hoazin
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Opisthocomiformes; Opisthocomidae; Opisthocomus
Orthologs
human mouse all
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Genomic context

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See TGDS in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009903289.1 (3681096..3698395, complement)

NW_009903289.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene dopachrome tautomerase Neighboring gene G protein-coupled receptor 180 Neighboring gene ATP binding cassette subfamily C member 4 (PEL blood group)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009903289.1 Unplaced Scaffold Reference ASM69207v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dTDP-glucose 4,6-dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-sugar metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dTDP-D-glucose 4,6-dehydratase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69207v1

Genomic

  1. NW_009903289.1 Reference ASM69207v1

    Range
    3681096..3698395 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009942359.1 → XP_009940661.1  dTDP-D-glucose 4,6-dehydratase

    UniProtKB/TrEMBL
    A0A091WMJ7
    Conserved Domains (2) summary
    cd05246
    Location:3 → 312
    dTDP_GD_SDR_e; dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs
    COG1088
    Location:3 → 316
    RfbB; dTDP-D-glucose 4,6-dehydratase [Cell wall/membrane/envelope biogenesis]
Nucleotide Protein
Heading Accession and Version

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