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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Opisthocomus hoazin ]

Gene ID: 104330280, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Locus tag
N306_11038
Gene type
protein coding
RefSeq status
MODEL
Organism
Opisthocomus hoazin
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Opisthocomiformes; Opisthocomidae; Opisthocomus
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM69207v1 (GCF_000692075.1) Unplaced Scaffold NW_009901457.1 (2179983..2247117, complement)

NW_009901457.1Genomic Context describing neighboring genes Neighboring gene WASH complex subunit 1 Neighboring gene zinc finger protein 883-like Neighboring gene DEAD/H-box helicase 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009901457.1 Unplaced Scaffold Reference ASM69207v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 1
Names
Transmembrane and TPR repeat-containing protein 1
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Opisthocomus hoazin Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69207v1

Genomic

  1. NW_009901457.1 Reference ASM69207v1

    Range
    2179983..2247117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009935466.1 → XP_009933768.1  transmembrane and TPR repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A091W985
    Conserved Domains (6) summary
    COG0457
    Location:275 → 546
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:256 → 284
    TPR; TPR repeat [structural motif]
    pfam13374
    Location:326 → 357
    TPR_10; Tetratricopeptide repeat
    pfam13414
    Location:156 → 219
    TPR_11; TPR repeat
    pfam13428
    Location:363 → 400
    TPR_14; Tetratricopeptide repeat
    pfam13431
    Location:210 → 242
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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