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SMPDL3B sphingomyelin phosphodiesterase acid like 3B [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104310102, updated on 3-Aug-2024

Summary

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Gene symbol
SMPDL3B
Gene description
sphingomyelin phosphodiesterase acid like 3B
Locus tag
N307_07124
See related
EnsemblRapid:ENSPPUG00010030537
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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See SMPDL3B in Genome Data Viewer
Location:
chromosome: 20
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 20 NC_071631.1 (8022537..8029191)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009662241.1 (1168422..1174760)

Chromosome 20 - NC_071631.1Genomic Context describing neighboring genes Neighboring gene thymocyte selection associated family member 2 Neighboring gene replication protein A2 Neighboring gene XK related 8 Neighboring gene EYA transcriptional coactivator and phosphatase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3b
Names
Acid sphingomyelinase-like phosphodiesterase 3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071631.1 Reference bDryPub1.pri

    Range
    8022537..8029191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009911508.2 → XP_009909810.2  acid sphingomyelinase-like phosphodiesterase 3b isoform X1

    Related
    ENSPPUP00010024578.1, ENSPPUT00010047812.1

  2. XM_054171054.1 → XP_054027029.1  acid sphingomyelinase-like phosphodiesterase 3b isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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