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CHPF chondroitin polymerizing factor [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104309788, updated on 3-Aug-2024

Summary

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Gene symbol
CHPF
Gene description
chondroitin polymerizing factor
Locus tag
N307_04346
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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See CHPF in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 2 NC_071613.1 (38225451..38230263)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009662227.1 (973577..976288)

Chromosome 2 - NC_071613.1Genomic Context describing neighboring genes Neighboring gene inhibin subunit alpha Neighboring gene obscurin like cytoskeletal adaptor 1 Neighboring gene transmembrane protein 198 Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene rac GTPase-activating protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2
Names
Chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071613.1 Reference bDryPub1.pri

    Range
    38225451..38230263
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054175320.1 → XP_054031295.1  chondroitin sulfate synthase 2 isoform X1

  2. XM_054175328.1 → XP_054031303.1  chondroitin sulfate synthase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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