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SYNJ1 synaptojanin 1 [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104306417, updated on 3-Aug-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
Locus tag
N307_12721
See related
EnsemblRapid:ENSPPUG00010000125
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 12 NC_071623.1 (22510423..22576583)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009665879.1 (1052324..1115328)

Chromosome 12 - NC_071623.1Genomic Context describing neighboring genes Neighboring gene exosomal polycystin 1 interacting protein Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene cilia and flagella associated protein 298 Neighboring gene eva-1 homolog C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1
Names
Synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071623.1 Reference bDryPub1.pri

    Range
    22510423..22576583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054166071.1 → XP_054022046.1  synaptojanin-1 isoform X1

  2. XM_054166072.1 → XP_054022047.1  synaptojanin-1 isoform X2

  3. XM_054166073.1 → XP_054022048.1  synaptojanin-1 isoform X3

    Related
    ENSPPUP00010000172.1, ENSPPUT00010000209.1

  4. XM_054166077.1 → XP_054022052.1  synaptojanin-1 isoform X7

  5. XM_054166076.1 → XP_054022051.1  synaptojanin-1 isoform X6

    Related
    ENSPPUP00010000166.1, ENSPPUT00010000203.1

  6. XM_054166074.1 → XP_054022049.1  synaptojanin-1 isoform X4

  7. XM_054166075.1 → XP_054022050.1  synaptojanin-1 isoform X5

  8. XM_054166078.1 → XP_054022053.1  synaptojanin-1 isoform X8

    Related
    ENSPPUP00010000163.1, ENSPPUT00010000200.1
Nucleotide Protein
Heading Accession and Version

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