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KDSR 3-ketodihydrosphingosine reductase [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104304230, updated on 3-Aug-2024

Summary

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Gene symbol
KDSR
Gene description
3-ketodihydrosphingosine reductase
Locus tag
N307_09676
See related
EnsemblRapid:ENSPPUG00010012373
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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See KDSR in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 9 NC_071620.1 (37693742..37719444)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009664995.1 (1027759..1051407)

Chromosome 9 - NC_071620.1Genomic Context describing neighboring genes Neighboring gene serpin family B member 5 Neighboring gene vacuolar protein sorting 4 homolog B Neighboring gene BCL2 apoptosis regulator Neighboring gene MARVEL domain-containing protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydrosphinganine reductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3-keto-sphinganine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-ketodihydrosphingosine reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071620.1 Reference bDryPub1.pri

    Range
    37693742..37719444
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009904952.2 → XP_009903254.1  3-ketodihydrosphingosine reductase

    See identical proteins and their annotated locations for XP_009903254.1

    UniProtKB/TrEMBL
    A0A093GUJ0
    Related
    ENSPPUP00010010915.1, ENSPPUT00010019363.1
    Conserved Domains (2) summary
    cd08939
    Location:32 → 268
    KDSR-like_SDR_c; 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR
    pfam00106
    Location:34 → 232
    adh_short; short chain dehydrogenase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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