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PNPLA4 patatin like phospholipase domain containing 4 [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104298347, updated on 18-Sep-2024

Summary

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Gene symbol
PNPLA4
Gene description
patatin like phospholipase domain containing 4
Locus tag
N307_04971
See related
EnsemblRapid:ENSPPUG00010000391
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Picidae; Dryobates
Orthologs
human all
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Genomic context

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See PNPLA4 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) 10 NC_071621.1 (926761..949157)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009663069.1 (15389..37099)

Chromosome 10 - NC_071621.1Genomic Context describing neighboring genes Neighboring gene anosmin 1 Neighboring gene U1 spliceosomal RNA Neighboring gene steroid sulfatase Neighboring gene pseudouridine 5'-phosphatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4
Names
Patatin-like phospholipase domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071621.1 Reference bDryPub1.pri

    Range
    926761..949157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009898405.2 → XP_009896707.2  patatin-like phospholipase domain-containing protein 4 isoform X3

  2. XM_054164642.1 → XP_054020617.1  patatin-like phospholipase domain-containing protein 4 isoform X2

  3. XM_054164640.1 → XP_054020615.1  patatin-like phospholipase domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A093G976
    Related
    ENSPPUP00010000494.1, ENSPPUT00010000553.1
Nucleotide Protein
Heading Accession and Version

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