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TMTC2 transmembrane O-mannosyltransferase targeting cadherins 2 [ Dryobates pubescens (Downy woodpecker) ]

Gene ID: 104297064, updated on 3-Aug-2024

Summary

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Gene symbol
TMTC2
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2
Locus tag
N307_00240
See related
EnsemblRapid:ENSPPUG00010017483
Gene type
protein coding
RefSeq status
MODEL
Organism
Dryobates pubescens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Coraciimorphae; Piciformes; Picidae; Dryobates
Orthologs
human mouse all
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Genomic context

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See TMTC2 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_03 current bDryPub1.pri (GCF_014839835.1) Z NC_071657.1 (131789475..132093842, complement)
100 previous assembly ASM69900v1 (GCF_000699005.1) Unplaced Scaffold NW_009662820.1 (337821..457497)

Chromosome Z - NC_071657.1Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 30 Neighboring gene U4 spliceosomal RNA Neighboring gene methyltransferase like 25 Neighboring gene coiled-coil domain containing 59

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2
Names
Transmembrane and TPR repeat-containing protein 2
transmembrane and tetratricopeptide repeat containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_014839835.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bDryPub1.pri

Genomic

  1. NC_071657.1 Reference bDryPub1.pri

    Range
    131789475..132093842 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054178580.1 → XP_054034555.1  protein O-mannosyl-transferase TMTC2 isoform X1

    Related
    ENSPPUP00010016539.1, ENSPPUT00010027436.1

  2. XM_054178581.1 → XP_054034556.1  protein O-mannosyl-transferase TMTC2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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