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ASPH aspartate beta-hydroxylase [ Charadrius vociferus (killdeer) ]

Gene ID: 104290660, updated on 3-Aug-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Locus tag
N301_03620
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009649460.1 (1693387..1796195)

NW_009649460.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 3 Neighboring gene gamma-glutamyl hydrolase Neighboring gene clavesin 1 Neighboring gene chromodomain helicase DNA binding protein 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009649460.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
Aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009649460.1 Reference ASM70802v2

    Range
    1693387..1796195
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009889784.1 → XP_009888086.1  aspartyl/asparaginyl beta-hydroxylase

    UniProtKB/TrEMBL
    A0A0A0AT09
    Conserved Domains (4) summary
    TIGR02795
    Location:359 → 472
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:14 → 269
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:475 → 499
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:608 → 761
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

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