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CHID1 chitinase domain containing 1 [ Charadrius vociferus (killdeer) ]

Gene ID: 104290277, updated on 3-Aug-2024

Summary

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Gene symbol
CHID1
Gene description
chitinase domain containing 1
Locus tag
N301_11123
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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See CHID1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009649309.1 (67412..194169)

NW_009649309.1Genomic Context describing neighboring genes Neighboring gene adaptor related protein complex 2 subunit alpha 2 Neighboring gene tetraspanin 4 Neighboring gene CD151 molecule (Raph blood group)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009649309.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oligosaccharide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase domain-containing protein 1
Names
Chitinase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009649309.1 Reference ASM70802v2

    Range
    67412..194169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009889354.1 → XP_009887656.1  chitinase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0AT94
    Conserved Domains (2) summary
    cd02876
    Location:91 → 407
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    smart00636
    Location:95 → 398
    Glyco_18; Glyco_18 domain

  2. XM_009889355.1 → XP_009887657.1  chitinase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A0A0AT94
    Conserved Domains (2) summary
    cd02876
    Location:82 → 367
    GH18_SI-CLP; Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl ...
    smart00636
    Location:86 → 358
    Glyco_18; Glyco_18 domain
Nucleotide Protein
Heading Accession and Version

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