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FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Charadrius vociferus (killdeer) ]

Gene ID: 104289048, updated on 3-Aug-2024

Summary

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Gene symbol
FDFT1
Gene description
farnesyl-diphosphate farnesyltransferase 1
Locus tag
N301_08997
Gene type
protein coding
RefSeq status
MODEL
Organism
Charadrius vociferus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Charadriidae; Charadrius
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current ASM70802v2 (GCF_000708025.1) Unplaced Scaffold NW_009649047.1 (152044..159822, complement)

NW_009649047.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene cathepsin B Neighboring gene nei like DNA glycosylase 2 Neighboring gene GATA binding protein 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009649047.1 Unplaced Scaffold Reference ASM70802v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables farnesyl-diphosphate farnesyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables squalene synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase
Names
Squalene synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Charadrius vociferus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70802v2

Genomic

  1. NW_009649047.1 Reference ASM70802v2

    Range
    152044..159822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009887939.1 → XP_009886241.1  squalene synthase

    UniProtKB/TrEMBL
    A0A0A0AP60
    Conserved Domains (1) summary
    cl00210
    Location:1 → 285
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
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